From b4659cd3336a5a82d75180fd18995ea7c7fb871f Mon Sep 17 00:00:00 2001 From: Mark Date: Sat, 1 Oct 2022 21:04:00 -0700 Subject: [PATCH] Added julia file --- jupyter/README.md | 2 +- jupyter/build/build.fish | 2 ++ jupyter/build/julia.Dockerfile | 46 ++++++++++++++++++++++++++++++++++ 3 files changed, 49 insertions(+), 1 deletion(-) create mode 100644 jupyter/build/julia.Dockerfile diff --git a/jupyter/README.md b/jupyter/README.md index c4de603..87fd682 100644 --- a/jupyter/README.md +++ b/jupyter/README.md @@ -44,6 +44,7 @@ The second line sets a persistent token. If this config value is unset, jupyter - pandas - Octave - R + - Julia ## TODO @@ -54,6 +55,5 @@ The second line sets a persistent token. If this config value is unset, jupyter - Haskell ([source](https://github.com/IHaskell/ihaskell-notebook)) - Rust Kernel - C++ Kernel - - Julia Kernel - Perl Kernel - Maxima Kernel diff --git a/jupyter/build/build.fish b/jupyter/build/build.fish index 179d676..dd99ce3 100755 --- a/jupyter/build/build.fish +++ b/jupyter/build/build.fish @@ -52,6 +52,8 @@ printf "Done. \n\n" build_image false octave build_image false r +build_image false julia +#build_image false haskell (BROKEN) #build_image false sage (BROKEN) #build_image false selenium (BROKEN) diff --git a/jupyter/build/julia.Dockerfile b/jupyter/build/julia.Dockerfile new file mode 100644 index 0000000..5712e75 --- /dev/null +++ b/jupyter/build/julia.Dockerfile @@ -0,0 +1,46 @@ +ARG BASE_CONTAINER=betalupi/jupyter-base +FROM $BASE_CONTAINER +LABEL maintainer="Mark " + +# install Julia packages in /opt/julia instead of $HOME +ENV JULIA_DEPOT_PATH=/opt/julia +ENV JULIA_PKGDIR=/opt/julia +ENV JULIA_VERSION=1.4.1 + +USER root + +WORKDIR /tmp +RUN mkdir "/opt/julia-${JULIA_VERSION}" && \ + wget -q https://julialang-s3.julialang.org/bin/linux/x64/$(echo "${JULIA_VERSION}" | cut -d. -f 1,2)"/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" && \ + echo "fd6d8cadaed678174c3caefb92207a3b0e8da9f926af6703fb4d1e4e4f50610a *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \ + tar xzf "julia-${JULIA_VERSION}-linux-x86_64.tar.gz" -C "/opt/julia-${JULIA_VERSION}" --strip-components=1 && \ + rm "/tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" +RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia + +# Show Julia where conda libraries are \ +RUN mkdir /etc/julia && \ + echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \ + # Create JULIA_PKGDIR \ + mkdir "${JULIA_PKGDIR}" && \ + chown "${NB_USER}" "${JULIA_PKGDIR}" && \ + fix-permissions "${JULIA_PKGDIR}" + +USER $NB_UID + +# Add Julia packages. Only add HDF5 if this is not a test-only build since +# it takes roughly half the entire build time of all of the images on Travis +# to add this one package and often causes Travis to timeout. +# +# Install IJulia as jovyan and then move the kernelspec out +# to the system share location. Avoids problems with runtime UID change not +# taking effect properly on the .local folder in the jovyan home dir. +RUN julia -e 'import Pkg; Pkg.update()' && \ + (test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \ + julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\"" && \ + # move kernelspec out of home \ + mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/kernels/" && \ + chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \ + rm -rf "${HOME}/.local" && \ + fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter" + +WORKDIR $HOME \ No newline at end of file