added sage build

master
Mark 2022-10-01 17:32:26 -07:00
parent 5200155770
commit 846365cb2b
Signed by: Mark
GPG Key ID: AD62BB059C2AAEE4
1 changed files with 65 additions and 0 deletions

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ARG BASE_CONTAINER=betalupi/jupyter-base
FROM $BASE_CONTAINER
LABEL maintainer="Mark <mark@betalupi.com>"
ARG SAGE_VERSION=9.0
ARG SAGE_PYTHON_VERSION=3.7
USER root
RUN apt-get update --yes && apt-get install --yes --no-install-recommends \
dvipng \
ffmpeg \
imagemagick \
texlive \
tk tk-dev \
jq && \
apt-get clean && rm -rf /var/lib/apt/lists/*
USER $NB_UID
# Initialize conda for shell interaction
RUN conda init bash
# Install Sage conda environment
RUN conda install --quiet --yes -n base -c conda-forge widgetsnbextension && \
conda create --quiet --yes -n sage -c conda-forge sage=$SAGE_VERSION python=$SAGE_PYTHON_VERSION && \
conda clean --all -f -y && \
npm cache clean --force && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER
# Install sagemath kernel and extensions using conda run:
# Create jupyter directories if they are missing
# Add environmental variables to sage kernal using jq
RUN echo ' \
from sage.repl.ipython_kernel.install import SageKernelSpec; \
SageKernelSpec.update(prefix=os.environ["CONDA_DIR"]); \
' | conda run -n sage sage && \
echo ' \
cat $SAGE_ROOT/etc/conda/activate.d/sage-activate.sh | \
grep -Po '"'"'(?<=^export )[A-Z_]+(?=)'"'"' | \
jq --raw-input '"'"'.'"'"' | jq -s '"'"'.'"'"' | \
jq --argfile kernel $SAGE_LOCAL/share/jupyter/kernels/sagemath/kernel.json \
'"'"'. | map(. as $k | env | .[$k] as $v | {($k):$v}) | add as $vars | $kernel | .env= $vars'"'"' > \
$CONDA_DIR/share/jupyter/kernels/sagemath/kernel.json \
' | conda run -n sage sh && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER
# Install sage's python kernel
RUN echo ' \
ls /opt/conda/envs/sage/share/jupyter/kernels/ | \
grep -Po '"'"'python\d'"'"' | \
xargs -I % sh -c '"'"' \
cd $SAGE_LOCAL/share/jupyter/kernels/% && \
cat kernel.json | \
jq '"'"'"'"'"'"'"'"' . | .display_name = .display_name + " (sage)" '"'"'"'"'"'"'"'"' > \
kernel.json.modified && \
mv -f kernel.json.modified kernel.json && \
ln -s $SAGE_LOCAL/share/jupyter/kernels/% $CONDA_DIR/share/jupyter/kernels/%_sage \
'"'"' \
' | conda run -n sage sh && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER