65 lines
2.2 KiB
Plaintext
65 lines
2.2 KiB
Plaintext
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ARG BASE_CONTAINER=betalupi/jupyter-base
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FROM $BASE_CONTAINER
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LABEL maintainer="Mark <mark@betalupi.com>"
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ARG SAGE_VERSION=9.0
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ARG SAGE_PYTHON_VERSION=3.7
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USER root
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RUN apt-get update --yes && apt-get install --yes --no-install-recommends \
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dvipng \
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ffmpeg \
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imagemagick \
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texlive \
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tk tk-dev \
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jq && \
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apt-get clean && rm -rf /var/lib/apt/lists/*
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USER $NB_UID
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# Initialize conda for shell interaction
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RUN conda init bash
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# Install Sage conda environment
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RUN conda install --quiet --yes -n base -c conda-forge widgetsnbextension && \
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conda create --quiet --yes -n sage -c conda-forge sage=$SAGE_VERSION python=$SAGE_PYTHON_VERSION && \
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conda clean --all -f -y && \
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npm cache clean --force && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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# Install sagemath kernel and extensions using conda run:
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# Create jupyter directories if they are missing
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# Add environmental variables to sage kernal using jq
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RUN echo ' \
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from sage.repl.ipython_kernel.install import SageKernelSpec; \
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SageKernelSpec.update(prefix=os.environ["CONDA_DIR"]); \
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' | conda run -n sage sage && \
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echo ' \
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cat $SAGE_ROOT/etc/conda/activate.d/sage-activate.sh | \
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grep -Po '"'"'(?<=^export )[A-Z_]+(?=)'"'"' | \
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jq --raw-input '"'"'.'"'"' | jq -s '"'"'.'"'"' | \
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jq --argfile kernel $SAGE_LOCAL/share/jupyter/kernels/sagemath/kernel.json \
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'"'"'. | map(. as $k | env | .[$k] as $v | {($k):$v}) | add as $vars | $kernel | .env= $vars'"'"' > \
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$CONDA_DIR/share/jupyter/kernels/sagemath/kernel.json \
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' | conda run -n sage sh && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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# Install sage's python kernel
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RUN echo ' \
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ls /opt/conda/envs/sage/share/jupyter/kernels/ | \
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grep -Po '"'"'python\d'"'"' | \
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xargs -I % sh -c '"'"' \
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cd $SAGE_LOCAL/share/jupyter/kernels/% && \
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cat kernel.json | \
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jq '"'"'"'"'"'"'"'"' . | .display_name = .display_name + " (sage)" '"'"'"'"'"'"'"'"' > \
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kernel.json.modified && \
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mv -f kernel.json.modified kernel.json && \
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ln -s $SAGE_LOCAL/share/jupyter/kernels/% $CONDA_DIR/share/jupyter/kernels/%_sage \
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'"'"' \
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' | conda run -n sage sh && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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